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Title: Arabidopsis A Practical Approach

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Table of Contents

     10.   Web-based bioinfomatic tools for Arabidopsis researchers

         (Seung Y. Rhee and David J. Flanders)

  1. Introduction
         What is bioinformatics
         Sources of Arabidopsis bioinformatic data

  2. Basic tools for the Internet
         Web basics
         Getting onto the Web
         Using your browser
         Browser tips and errors
         Privacy issues

  3. Scenarios of bioinformatic use in Arabidopsis research

  4. Gene information resources
         General gene information
         Arabidopsis gene information
         Plant gene information

  5. Maps
         Genetic maps
         Physical maps

  6. Sequencing
         The Arabidopsis genome initiative (AGI)
         Annotation of sequences by AGI
         Caveats in annotation
         Sequence contigs from AtDB

  7. Sequence analysis tools
        BLAST
         FASTA
         EST databases
         Gene identification programs
         Gene family analyses
         Motif analyses
         Protein structures
         Comprehensive sequence analysis tools

  8. Current issue and future directions in bioinformatics
         Some important bioinformatic issues
         Bioinformatic tools currently under development for                  Arabidopsis research

  9. Conclusion

     Acknowledgments

     References

     Appendix 1

     Glossary

Appendix

Index

Page

225

 

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